Publications

Multi-scale graph theoretical analysis of resting-state fMRI for classification of Alzheimer’s disease, mild cognitive impairment, and healthy controls

Published in Signal, Image and Video Processing (Springer Nature), 2025

Abstract

Recommended citation: Khazaee, Ali; Mohammadi, Abdolreza; O’Reilly, Ruairi (2025). “Multi-scale graph theoretical analysis of resting-state fMRI for classification of Alzheimer’s disease, mild cognitive impairment, and healthy controls.” Signal, Image and Video Processing (Springer Nature).

Investigating the Relationships Between Basic Emotions and the Big Five Personality Traits and Their Sub-Traits

Published in Journal of Personality, 2025

Abstract

Recommended citation: Donovan, Ryan; Johnson, Aoife; De Roiste, Aine; O'Reilly, Ruairi (2025). “Investigating the Relationships Between Basic Emotions and the Big Five Personality Traits and Their Sub-Traits.” Journal of Personality.

Evaluating the Validity of Automated Emotion Detection from Spontaneous Expressions across Modalities: Insights from the PEM Dataset

Published in OSF, 2024

Abstract

Recommended citation: Donovan, Ryan; Johnson, Aoife; deRoiste, Aine; O’Reilly, Ruairi (2024). “Evaluating the Validity of Automated Emotion Detection from Spontaneous Expressions across Modalities: Insights from the PEM Dataset.” OSF.

Early Stopping Criteria for Training Generative Adversarial Networks in Biomedical Imaging

Published in TBD, 2024

Abstract

Recommended citation: Saad, Muhammad Muneeb and Rehmani, Mubashir Husain and O'Reilly, Ruairi} (2024). “Early Stopping Criteria for Training Generative Adversarial Networks in Biomedical Imaging.” TBD.
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Classification of Stress via Ambulatory ECG and GSR Data

Published in Human Activity and Behavior Analysis, 2024

Abstract

Recommended citation: Dair, Zachary and Saad, Muhammad and Pawar, Urja and O'Reilly, Ruairi and Dockray, Samantha (2024). “Classification of Stress via Ambulatory ECG and GSR Data.” Human Activity and Behavior Analysis.
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Beyond Affect: Exploring the Emotional Dimensions of the Big Five and their Sub-Traits

Published in TBD, 2024

Abstract

Recommended citation: Donovan, Ryan and Johnson, Aoife and De Roiste, Aine and O'Reilly, Ruairi (2024). “Beyond Affect: Exploring the Emotional Dimensions of the Big Five and their Sub-Traits.” TBD.
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A survey on training challenges in generative adversarial networks for biomedical image analysis

Published in Artificial Intelligence Review, 2024

Abstract

Recommended citation: Saad, Muhammad Muneeb and O’Reilly, Ruairi and Rehmani, Mubashir Husain (2024). “A survey on training challenges in generative adversarial networks for biomedical image analysis.” Artificial Intelligence Review.
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Evaluating the Quality and Diversity of DCGAN-based Generatively Synthesized Diabetic Retinopathy Imagery

Published in Advances in Deep Generative Models for Medical Artificial Intelligence, 2023

Abstract

Recommended citation: Dragan, Cristina-Madalina and Saad, Muhammad Muneeb and Rehmani, Mubashir Husain and O'Reilly, Ruairi (2023). “Evaluating the Quality and Diversity of DCGAN-based Generatively Synthesized Diabetic Retinopathy Imagery.” Advances in Deep Generative Models for Medical Artificial Intelligence.
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Assessing Intra-class Diversity and Quality of Synthetically Generated Images in a Biomedical and Non-biomedical Setting

Published in TBD, 2023

Abstract

Recommended citation: Saad, Muhammad Muneeb and Rehmani, Mubashir Husain and O'Reilly, Ruairi (2023). “Assessing Intra-class Diversity and Quality of Synthetically Generated Images in a Biomedical and Non-biomedical Setting.” TBD.
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Adaptive Input-image Normalization for Solving Mode Collapse Problem in GAN-based X-ray Images

Published in TBD, 2023

Abstract

Recommended citation: Saad, Muhammad Muneeb and Rehmani, Mubashir Husain and O'Reilly, Ruairi (2023). “Adaptive Input-image Normalization for Solving Mode Collapse Problem in GAN-based X-ray Images.” TBD.
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A Self-attention Guided Multi-scale Gradient GAN for Diversified X-ray Image Synthesis

Published in 30th Irish Conference on Artificial Intelligence and Cognitive Science, 2023

Abstract

Recommended citation: Muneeb Saad, Muhammad and Husain Rehmani, Mubashir and O'Reilly, Ruairi (2023). “A Self-attention Guided Multi-scale Gradient GAN for Diversified X-ray Image Synthesis.” 30th Irish Conference on Artificial Intelligence and Cognitive Science.
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Variance in Classifying Affective State via Electrocardiogram and Photoplethysmography.

Published in , 2022

Abstract

Recommended citation: Dair, Zachary and Dockray, Samantha and O'Reilly, Ruairi (2022). “Variance in Classifying Affective State via Electrocardiogram and Photoplethysmography..” .

Classification of Sleep Apnea via SpO2 in a Simulated Smartwatch Environment

Published in IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI), 2022

Abstract

Recommended citation: Lyden, Brendan and Dair, Zachary and O'Reilly, Ruairi (2022). “Classification of Sleep Apnea via SpO2 in a Simulated Smartwatch Environment.” IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI).

Linguistic and gender variation in speech emotion recognition using spectral features

Published in Irish Conference on Artificial Intelligence and Cognitive Science (AICS), 2021

Abstract

Recommended citation: Dair, Zachary and Donovan, Ryan and O'Reilly, Ruairi (2021). “Linguistic and gender variation in speech emotion recognition using spectral features.” Irish Conference on Artificial Intelligence and Cognitive Science (AICS).
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A Distributed Architecture for the Monitoring and Analysis of Time Series Data

Published in University College Cork, 2015

Abstract

Recommended citation: Ruairi O'Reilly (2015). “A Distributed Architecture for the Monitoring and Analysis of Time Series Data.” University College Cork.
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Optimal Neighborhood Contexts in Explainable AI: An Explanandum-Based Evaluation

Published in , 1900

Abstract

Recommended citation: Pawar, Urja and O'Shea, Donna and O'Reilly, Ruairi and Costello, Maebh and Beder, Christian (1900). “Optimal Neighborhood Contexts in Explainable AI: An Explanandum-Based Evaluation.” .

FAIR-MED: Bias Detection and Fairness Evaluation in Healthcare Focused XAI

Published in World Conference on Explainable Artificial Intelligence, 2025

Recommended citation: Bahamazava, Katsiaryna; O’Reilly, Ruairi (2025). “FAIR-MED: Bias Detection and Fairness Evaluation in Healthcare Focused XAI.” World Conference on Explainable Artificial Intelligence.

The Dynamics of Explainability: Diverse Insights from SHAP Explanations using Neighbourhoods

Published in Late-breaking work, Demos and Doctoral Consortium, colocated with The 2nd World Conference on eXplainable Artificial Intelligence, 2024

Abstract

Recommended citation: Pawar, Urja and O’Reilly, Ruairi and Beder, Christian and O’Shea, Donna (2024). “The Dynamics of Explainability: Diverse Insights from SHAP Explanations using Neighbourhoods.” Late-breaking work, Demos and Doctoral Consortium, colocated with The 2nd World Conference on eXplainable Artificial Intelligence.
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On the Impact of Neighbourhood Sampling to Satisfy Sufficiency and Necessity Criteria in Explainable AI

Published in 3rd Conference on Causal Learning and Reasoning, 2024

Abstract

Recommended citation: Pawar, Urja and Beder, Christian and Ruairi, O and Donna, O and others (2024). “On the Impact of Neighbourhood Sampling to Satisfy Sufficiency and Necessity Criteria in Explainable AI.” 3rd Conference on Causal Learning and Reasoning.
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WebTransport and WebSockets: An Empirical Analysis of Connection Time, Message Response, and Payload Efficiency

Published in 34th Irish Signals and Systems Conference (ISSC), 2023

Abstract

Recommended citation: Williamson, Declan and O’Reilly, Ruairi (2023). “WebTransport and WebSockets: An Empirical Analysis of Connection Time, Message Response, and Payload Efficiency.” 34th Irish Signals and Systems Conference (ISSC).

InceptionCaps: A Performant Glaucoma Classification Model for Data-Scarce Environment

Published in 31st Irish Conference on Artificial Intelligence and Cognitive Science (AICS), 2023

Abstract

Recommended citation: Manohar, Gyanendar and O'Reilly, Ruairi (2023). “InceptionCaps: A Performant Glaucoma Classification Model for Data-Scarce Environment.” 31st Irish Conference on Artificial Intelligence and Cognitive Science (AICS).
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Complex Adaptive Systems and Psychophysiological Data-An Exploratory Approach

Published in 31st Irish Conference on Artificial Intelligence and Cognitive Science (AICS), 2023

Abstract

Recommended citation: Dair, Zachary and Dockray, Samantha and O'Reilly, Ruairi (2023). “Complex Adaptive Systems and Psychophysiological Data-An Exploratory Approach.” 31st Irish Conference on Artificial Intelligence and Cognitive Science (AICS).

Inter and intra signal variance in feature extraction and classification of affective state

Published in 30th Irish Conference on Artificial Intelligence and Cognitive Science, 2022

Abstract

Recommended citation: Dair, Zachary and Dockray, Samantha and O’Reilly, Ruairi (2022). “Inter and intra signal variance in feature extraction and classification of affective state.” 30th Irish Conference on Artificial Intelligence and Cognitive Science.
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FAIR Skin Lesion Classification Workflows using Transfer Learning

Published in 33rd Irish Signals and Systems Conference (ISSC), 2022

Abstract

Recommended citation: Walshe, David and O'Reilly, Ruairi (2022). “FAIR Skin Lesion Classification Workflows using Transfer Learning.” 33rd Irish Signals and Systems Conference (ISSC).
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Addressing the intra-class mode collapse problem using adaptive input image normalization in GAN-based X-ray images

Published in 44th annual international conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2022

Abstract

Recommended citation: Saad, Muhammad Muneeb and Rehmani, Mubashir Husain and O'Reilly, Ruairi (2022). “Addressing the intra-class mode collapse problem using adaptive input image normalization in GAN-based X-ray images.” 44th annual international conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
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Sleep Apnea Classification in an Activity Tracker Environment

Published in 2021 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI), 2021

Abstract

Recommended citation: Brendan Lyden, Ruairi O'Reilly (2021). “Sleep Apnea Classification in an Activity Tracker Environment.” 2021 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI).

Methods for Creating Reproducible Machine Learning Pipelines for Skin Lesion Classification

Published in 2021 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI), 2021

Abstract

Recommended citation: David Walshe, Ruairi O'Reilly (2021). “Methods for Creating Reproducible Machine Learning Pipelines for Skin Lesion Classification.” 2021 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI).

Evaluating Hierarchical Medical Workflows using Feature Importance

Published in IEEE 34th International Symposium on Computer-Based Medical Systems (CBMS), 2021

Abstract

Recommended citation: Pawar, Urja and Culbert, Christopher T and O'Reilly, Ruairi (2021). “Evaluating Hierarchical Medical Workflows using Feature Importance.” IEEE 34th International Symposium on Computer-Based Medical Systems (CBMS).

Classification of Emotive Expression Using Verbal and Non Verbal Components of Speech

Published in 32nd Irish Signals and Systems Conference (ISSC), 2021

Abstract

Recommended citation: Dair, Zachary and Donovan, Ryan and O’Reilly, Ruairi (2021). “Classification of Emotive Expression Using Verbal and Non Verbal Components of Speech.” 32nd Irish Signals and Systems Conference (ISSC).

A Multimodal Workflow for Modeling Personality and Emotions to Enable User Profiling and Personalisation

Published in 5th International Conference on Human Computer Interaction Theory and Applications (HUCAPP 2021), 2021

Abstract

Recommended citation: Ryan Donovan, Aoife Johnson, Aine deRoiste, Ruairi O'Reilly (2021). “A Multimodal Workflow for Modeling Personality and Emotions to Enable User Profiling and Personalisation.” 5th International Conference on Human Computer Interaction Theory and Applications (HUCAPP 2021).

Quantifying the Links between the Basic Emotions and Personality Sub-Traits

Published in Workshop on Affective Computing and Emotion Recognition, 2020

Abstract

Recommended citation: Ryan Donovan, Aoife Johnson, Aine De Roiste, Ruairi O'Reilly (2020). “Quantifying the Links between the Basic Emotions and Personality Sub-Traits.” Workshop on Affective Computing and Emotion Recognition.
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Incorporating Explainable Artificial Intelligence (XAI) to aid the Understanding of Machine Learning in the Healthcare Domain

Published in The 28th Irish Conference on Artificial Intelligence and Cognitive Science, 2020

Abstract

Recommended citation: Urja Pawar, Donna O’Shea, Susan Rea, Ruairi O’Reilly (2020). “Incorporating Explainable Artificial Intelligence (XAI) to aid the Understanding of Machine Learning in the Healthcare Domain.” The 28th Irish Conference on Artificial Intelligence and Cognitive Science.
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Improving Academic Performance Amongst First Years College Students through a Goal-Setting Program

Published in The 31st Irish Signals and Systems Conference, 2020

Abstract

Recommended citation: Ryan Donovan, Jamie Cotter, Ruairi O'Reilly (2020). “Improving Academic Performance Amongst First Years College Students through a Goal-Setting Program.” The 31st Irish Signals and Systems Conference.
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Explainable AI in Smart Healthcare

Published in Cyber Science 2020, 2020

Abstract

Recommended citation: Urja Pawar, Susan Rea, Donna O'Shea, Ruairi O'Reilly (2020). “Explainable AI in Smart Healthcare.” Cyber Science 2020.
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Differentiation in Personality Emotion Mappings From Self Reported Emotion and Automatically Classified Emotion

Published in The 28th Irish Conference on Artificial Intelligence and Cognitive Science (AICS2020), 2020

Abstract

Recommended citation: Ryan Donovan, Aoife Johnson, Ruairi O’Reilly (2020). “Differentiation in Personality Emotion Mappings From Self Reported Emotion and Automatically Classified Emotion.” The 28th Irish Conference on Artificial Intelligence and Cognitive Science (AICS2020).
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An Ensemble-based Approach to the Detection of COVID-19 Induced Pneumonia using X-Ray Imagery

Published in Irish Machine Vision & Image Processing Conference, 2020

Abstract

Recommended citation: Chand Sheikh, Farshad Ghassemi Toosi, Ruairi O'Reilly (2020). “An Ensemble-based Approach to the Detection of COVID-19 Induced Pneumonia using X-Ray Imagery.” Irish Machine Vision & Image Processing Conference.

A Comparative Analysis of a State-of-the-Art CNN versus a Bespoke Capsule Network for Cell Image Classification

Published in Irish Machine Vision & Image Processing Conference, 2020

Abstract

Recommended citation: Liam Murphy, Ruairi O'Reilly (2020). “A Comparative Analysis of a State-of-the-Art CNN versus a Bespoke Capsule Network for Cell Image Classification.” Irish Machine Vision & Image Processing Conference.

Interpretable Machine Learning Models for Assisting Clinicians in the Analysis of Physiological Data

Published in The 27th Irish Conference on Artificial Intelligence and Cognitive Science, 2019

Abstract

Recommended citation: P. Nisha, Urja Pawar and Ruairi O'Reilly (2019). “Interpretable Machine Learning Models for Assisting Clinicians in the Analysis of Physiological Data.” The 27th Irish Conference on Artificial Intelligence and Cognitive Science.
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Enabling Multi-Party Consensual Data Exchange Through Blockchain

Published in The 27th Irish Conference on Artificial Intelligence and Cognitive Science, 2019

Abstract

Recommended citation: Jack Hickey, Ruairi O'Reilly (2019). “Enabling Multi-Party Consensual Data Exchange Through Blockchain.” The 27th Irish Conference on Artificial Intelligence and Cognitive Science.
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Arrhythmia Detection in ECG Signals Using a Multilayer Perceptron Network

Published in The 27th Irish Conference on Artificial Intelligence and Cognitive Science, 2019

Abstract

Recommended citation: Gaurav Kumar, Urja Pawar and Ruairi O'Reilly (2019). “Arrhythmia Detection in ECG Signals Using a Multilayer Perceptron Network.” The 27th Irish Conference on Artificial Intelligence and Cognitive Science.
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A Comparative Analysis of Classification Techniques for Cervical Cancer Utilising At Risk Factors and Screening Test Results

Published in The 27th Irish Conference on Artificial Intelligence and Cognitive Science, 2019

Abstract

Recommended citation: Sean Quinlan, Haithem Afli and Ruairi O'Reilly (2019). “A Comparative Analysis of Classification Techniques for Cervical Cancer Utilising At Risk Factors and Screening Test Results.” The 27th Irish Conference on Artificial Intelligence and Cognitive Science.
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Beats-Per-Minute (BPM): A Microservice-based Platform for the Monitoring of Health-Related Data via Activity Trackers

Published in The 20th IEEE International Conference on E-health Networking, Application & Services, 2018

Abstract

Recommended citation: Orla O'Brien, R. D. O'Reilly (2018). “Beats-Per-Minute (BPM): A Microservice-based Platform for the Monitoring of Health-Related Data via Activity Trackers.” The 20th IEEE International Conference on E-health Networking, Application & Services.
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An Evaluation of Convolutional Neural Network Models for Object Detection in Images on Low-End Devices

Published in The 26th Irish Conference on Artificial Intelligence and Cognitive Science, 2018

Abstract

Recommended citation: David Foley, Ruairi O'Reilly (2018). “An Evaluation of Convolutional Neural Network Models for Object Detection in Images on Low-End Devices.” The 26th Irish Conference on Artificial Intelligence and Cognitive Science.
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ScrutiniseIT: A Search-Based Approach to EEG Seizure Detection

Published in The Fifth International Conference on eHealth, Telemedicine, and Social Medicine, 2013

Abstract

Recommended citation: Ruairi O'Reilly, D Power, PD Healy, JP Morrison and GB Boylan (2013). “ScrutiniseIT: A Search-Based Approach to EEG Seizure Detection.” The Fifth International Conference on eHealth, Telemedicine, and Social Medicine.
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A System for the Transmission, Processing and Visualisation of EEG to Support Irish Neonatal Intensive Care Units

Published in The 25th Canadian Conference on Electrical and Computer Engineering, 2012

Abstract

Recommended citation: Ruairi O'Reilly, JP Morrison and Carolyn McGregor (2012). “A System for the Transmission, Processing and Visualisation of EEG to Support Irish Neonatal Intensive Care Units.” The 25th Canadian Conference on Electrical and Computer Engineering.
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Interactive Annotations to Support Collaborative Analysis of Streaming Physiological Data

Published in The 24th International Symposium on Computer-Based Medical Systems, 2011

Abstract

Recommended citation: Ruairi O'Reilly, PD Healy, GB Boylan and JP Morrison (2011). “Interactive Annotations to Support Collaborative Analysis of Streaming Physiological Data.” The 24th International Symposium on Computer-Based Medical Systems.
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Web-based remote monitoring of live EEG

Published in The 12th International Conference on E-Health Networking, Applications and Services, 2010

Abstract

Recommended citation: PD Healy, Ruairi O'Reilly, GB Boylan, and JP Morrison (2010). “Web-based remote monitoring of live EEG.” The 12th International Conference on E-Health Networking, Applications and Services.
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An Agent Framework for the Analysis of Streaming Physiological Data

Published in The 3rd International ICST Conference on Electronic Healthcare, 2010

Abstract

Recommended citation: Ruairi O'Reilly, PD Healy, JP Morrison and GB Boylan (2010). “An Agent Framework for the Analysis of Streaming Physiological Data.” The 3rd International ICST Conference on Electronic Healthcare.
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