Ruairí O'Reilly

Ruairí O'Reilly

Lecturer in Computer Science at Munster Technological University. Research in Explainable AI, generative AI evaluation, biomedical AI, fairness and decision support.

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Pages

Posts

Future Blog Post

less than 1 minute read

Published:

This post will show up by default. To disable scheduling of future posts, edit config.yml and set future: false.

Blog Post number 4

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This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.

Blog Post number 3

less than 1 minute read

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Blog Post number 2

less than 1 minute read

Published:

This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.

Blog Post number 1

less than 1 minute read

Published:

This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.

portfolio

publications

Web-based remote monitoring of live EEG

Published in The 12th International Conference on E-Health Networking, Applications and Services, 2010

Abstract

Recommended citation: PD Healy, Ruairi O'Reilly, GB Boylan, and JP Morrison (2010). “Web-based remote monitoring of live EEG.” The 12th International Conference on E-Health Networking, Applications and Services.
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ScrutiniseIT: A Search-Based Approach to EEG Seizure Detection

Published in The Fifth International Conference on eHealth, Telemedicine, and Social Medicine, 2013

Abstract

Recommended citation: Ruairi O'Reilly, D Power, PD Healy, JP Morrison and GB Boylan (2013). “ScrutiniseIT: A Search-Based Approach to EEG Seizure Detection.” The Fifth International Conference on eHealth, Telemedicine, and Social Medicine.
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Beats-Per-Minute (BPM): A Microservice-based Platform for the Monitoring of Health-Related Data via Activity Trackers

Published in The 20th IEEE International Conference on E-health Networking, Application & Services, 2018

Abstract

Recommended citation: Orla O'Brien, R. D. O'Reilly (2018). “Beats-Per-Minute (BPM): A Microservice-based Platform for the Monitoring of Health-Related Data via Activity Trackers.” The 20th IEEE International Conference on E-health Networking, Application & Services.
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A Comparative Analysis of Classification Techniques for Cervical Cancer Utilising At Risk Factors and Screening Test Results

Published in The 27th Irish Conference on Artificial Intelligence and Cognitive Science, 2019

Abstract

Recommended citation: Sean Quinlan, Haithem Afli and Ruairi O'Reilly (2019). “A Comparative Analysis of Classification Techniques for Cervical Cancer Utilising At Risk Factors and Screening Test Results.” The 27th Irish Conference on Artificial Intelligence and Cognitive Science.
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Differentiation in Personality Emotion Mappings From Self Reported Emotion and Automatically Classified Emotion

Published in The 28th Irish Conference on Artificial Intelligence and Cognitive Science (AICS2020), 2020

Abstract

Recommended citation: Ryan Donovan, Aoife Johnson, Ruairi O’Reilly (2020). “Differentiation in Personality Emotion Mappings From Self Reported Emotion and Automatically Classified Emotion.” The 28th Irish Conference on Artificial Intelligence and Cognitive Science (AICS2020).
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Incorporating Explainable Artificial Intelligence (XAI) to aid the Understanding of Machine Learning in the Healthcare Domain

Published in The 28th Irish Conference on Artificial Intelligence and Cognitive Science, 2020

Abstract

Recommended citation: Urja Pawar, Donna O’Shea, Susan Rea, Ruairi O’Reilly (2020). “Incorporating Explainable Artificial Intelligence (XAI) to aid the Understanding of Machine Learning in the Healthcare Domain.” The 28th Irish Conference on Artificial Intelligence and Cognitive Science.
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A Multimodal Workflow for Modeling Personality and Emotions to Enable User Profiling and Personalisation

Published in 5th International Conference on Human Computer Interaction Theory and Applications (HUCAPP 2021), 2021

Abstract

Recommended citation: Ryan Donovan, Aoife Johnson, Aine deRoiste, Ruairi O'Reilly (2021). “A Multimodal Workflow for Modeling Personality and Emotions to Enable User Profiling and Personalisation.” 5th International Conference on Human Computer Interaction Theory and Applications (HUCAPP 2021).

Evaluating Hierarchical Medical Workflows using Feature Importance

Published in IEEE 34th International Symposium on Computer-Based Medical Systems (CBMS), 2021

Abstract

Recommended citation: Pawar, Urja and Culbert, Christopher T and O'Reilly, Ruairi (2021). “Evaluating Hierarchical Medical Workflows using Feature Importance.” IEEE 34th International Symposium on Computer-Based Medical Systems (CBMS).

Sleep Apnea Classification in an Activity Tracker Environment

Published in 2021 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI), 2021

Abstract

Recommended citation: Brendan Lyden, Ruairi O'Reilly (2021). “Sleep Apnea Classification in an Activity Tracker Environment.” 2021 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI).

Addressing the intra-class mode collapse problem using adaptive input image normalization in GAN-based X-ray images

Published in 44th annual international conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2022

Abstract

Recommended citation: Saad, Muhammad Muneeb and Rehmani, Mubashir Husain and O'Reilly, Ruairi (2022). “Addressing the intra-class mode collapse problem using adaptive input image normalization in GAN-based X-ray images.” 44th annual international conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
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Classification of Sleep Apnea via SpO2 in a Simulated Smartwatch Environment

Published in IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI), 2022

Abstract

Recommended citation: Lyden, Brendan and Dair, Zachary and O'Reilly, Ruairi (2022). “Classification of Sleep Apnea via SpO2 in a Simulated Smartwatch Environment.” IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI).

Complex Adaptive Systems and Psychophysiological Data-An Exploratory Approach

Published in 31st Irish Conference on Artificial Intelligence and Cognitive Science (AICS), 2023

Abstract

Recommended citation: Dair, Zachary and Dockray, Samantha and O'Reilly, Ruairi (2023). “Complex Adaptive Systems and Psychophysiological Data-An Exploratory Approach.” 31st Irish Conference on Artificial Intelligence and Cognitive Science (AICS).

Evaluating the Quality and Diversity of DCGAN-based Generatively Synthesized Diabetic Retinopathy Imagery

Published in Advances in Deep Generative Models for Medical Artificial Intelligence, 2023

Abstract

Recommended citation: Dragan, Cristina-Madalina and Saad, Muhammad Muneeb and Rehmani, Mubashir Husain and O'Reilly, Ruairi (2023). “Evaluating the Quality and Diversity of DCGAN-based Generatively Synthesized Diabetic Retinopathy Imagery.” Advances in Deep Generative Models for Medical Artificial Intelligence.
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Classification of Stress via Ambulatory ECG and GSR Data

Published in Human Activity and Behavior Analysis, 2024

Abstract

Recommended citation: Dair, Zachary and Saad, Muhammad and Pawar, Urja and O'Reilly, Ruairi and Dockray, Samantha (2024). “Classification of Stress via Ambulatory ECG and GSR Data.” Human Activity and Behavior Analysis.
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The Dynamics of Explainability: Diverse Insights from SHAP Explanations using Neighbourhoods

Published in Late-breaking work, Demos and Doctoral Consortium, colocated with The 2nd World Conference on eXplainable Artificial Intelligence, 2024

Abstract

Recommended citation: Pawar, Urja and O’Reilly, Ruairi and Beder, Christian and O’Shea, Donna (2024). “The Dynamics of Explainability: Diverse Insights from SHAP Explanations using Neighbourhoods.” Late-breaking work, Demos and Doctoral Consortium, colocated with The 2nd World Conference on eXplainable Artificial Intelligence.
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Multi-scale graph theoretical analysis of resting-state fMRI for classification of Alzheimer’s disease, mild cognitive impairment, and healthy controls

Published in Signal, Image and Video Processing (Springer Nature), 2025

Abstract

Recommended citation: Khazaee, Ali; Mohammadi, Abdolreza; O’Reilly, Ruairi (2025). “Multi-scale graph theoretical analysis of resting-state fMRI for classification of Alzheimer’s disease, mild cognitive impairment, and healthy controls.” Signal, Image and Video Processing (Springer Nature).

talks

Explainable Artificial intelligence in Healthcare

Published:

Explainable Artificial intelligence in Healthcare. Artificial Intelligence (AI) is an enabling technology that when integrated into healthcare applications and smart wearable devices such as Fitbits etc. can predict the occurrence of health conditions in users by capturing and analysing their health data. The integration of AI and smart wearable devices has a range of potential applications in the area of smart healthcare but there is a challenge in the black box operation of decisions made by AI models which have resulted in a lack of accountability and trust in the decisions made. Explainable AI (XAI) is a domain in which techniques are developed to explain predictions made by AI systems. In this paper, XAI is discussed as a technique that can be used in the analysis and diagnosis of health data by AI-based systems and a proposed approach presented with the aim of achieving accountability. transparency, result tracing, and model improvement in the domain of healthcare.

Quantifying the Links between Personality Sub-Traits and the Basic Emotions

Published:

This video presents an exploratory study that aimed to analyse the relationship between personality traits and emotions. In particular, it investigates to what extent the sub-traits of the Five-Factor Model has an empirically quantifiable correlation with the Basic Emotions (Anger, Anxiety, Disgust, Fear, Joy, Sadness, Surprise). If links between these personality traits and the basic emotions can be found, then this would enable an emotional-state-to-personality-trait mapping. In this study, 38 participants answered a Big Five Aspects Scale (BFAS) questionnaire and then watched 12 emotionally provocative film clips along with answering 12 short emotional Likert-scales on their emotional experiences during each film clip. The results showed that (i) four of the seven Basic Emotions outright significantly correlated, while two emotions (Fear and Disgust) approached statistical significance, with at least one of the personality traits and (ii) significant correlations between personality traits and basic emotions could only be identified at the sub-trait level, demonstrating the value in adopting a higher-resolution personality model. The results support the long-term goal of this research, which is the enabling of state-to-trait inferences. A method for analysing and visualising such a mapping, that differentiates mappings based on the direction and magnitude of the effect size was also developed. The study contributes a blueprint towards utilising Affective Computing methodology to automatically map these phenomena.

How can #AI lead the way in fighting COVID19?

Published:

Op-ed piece on recent work undertaken by Farshad Ghassemi Toosi and myself in the Business Post over the weekend discussing how Artificial Intelligence can be used to predict which Coronavirus infected patient may develop severe respiratory symptoms.

An Ensemble-based Approach to the Detection of COVID-19 Induced Pneumonia using X-Ray Imagery

Published:

AThe rapid emergence and spread of COVID-19 resulted in a surge in demand for laboratory-based testing globally. Currently, the gold standard diagnostic approach is large-scale molecular testing of biological samples which detect the SARS-CoV-2 virus RNA. Infrastructure limitations and supply shortages are limiting testing capacity with a growing demand for COVID-19 diagnostics across the EU. X-ray imagery is essential in establishing the severity of a multitude of diseases and monitoring responses of patients in the hospital setting. X-ray imagery should not be used to screen for or as a first-line test to detect COVID-19. However, X-ray presents an ideal opportunity to integrate additional screening measures into a pre-existing workflow. This paper investigates the utilisation of machine learning in automating the detection of COVID-19 induced pneumonia from X-Ray imagery.The approach will assist radiologists in the monitoring and differentiation of pneumonia caused by COVID-19 from other viral causes. A classification for the presence, or absence, of pneumonia caused by COVID-19 and other viral causes is derived. The paper contributes an initial investigation into an ensemble-learning based approach using transfer learning models VGG16, Inception and ResNet. The results of this work indicate an improved performance using ensemble-based learning as compared to an individual transfer learning model.

Performance Analysis of State-of-the-Art CNN versus a Capsule Network for Cell Image Classification

Published:

Despite the state of the art performance on object recognition and image classification problems, CNNs are considered to have two significant weaknesses. Firstly, their inability to cater to changes in object orientation, position or lighting. Secondly, their inability to deal with part-whole relationships between objects. Capsule Networks are an enhancement to CNNs to more closely model the viewpoint invariance capability of human vision. The application of Capsule Networks to well-known datasets, such as MNIST and NORB, has achieved a state of the art performance, while the application to other datasets has had mixed results. The application of Capsule Networks to domains such as medical-based imaging problems is of significant interest as they have been shown to train accurately on some datasets with limited training data. Research undertaken by Liam Murphy (MSc AI) on the Performance of a State-of-the-Art CNN versus a Capsule Network for Cell Image Classification presented as part of the Irish Machine Vision & Image Processing Conference #IMVIP2020

Differentiation in Personality Emotion Mappings From Self Reported Emotion and Automatically Classified Emotion

Published:

PhD student Ryan Donovan on differentiation in #Personality and #Emotion Mappings From Self-Reported Emotion and Automatically Classified Emotion presented as part of #AICS2020. The work investigates the robustness of the relationship between personality and emotions across modalities. It is a step towards enabling a more generalised bidirectional model of personality-emotion mapping which will be of interest to researchers in the area of #affectivecomputing and #appliedpsychology The camera-ready paper is now available on Research Gate - https://bit.ly/37sav9n

A Multimodal Workflow for Modeling Personality And Emotions to Enable User Profiling and Personalisation

Published:

Introducing PEM - A Multimodal Workflow for Modelling Personality And Emotions to Enable User Profiling and Personalisation. Ryan Donovan presents PEM’s functionality and use cases as part of #HUCAPP2021. Multimodal analysis for state-to-trait mappings updated with regard to magnitude, direction, and statistical significance as data is entered. Will appeal to those interested in #affectivecomputing #appliedpsychology Camera-ready paper is now available on Research Gate.

Evaluating Hierarchical Medical Workflows using Feature Importance

Published:

Our work on utilising hierarchical medical workflow for understanding the operation of ML in a healthcare-based setting was presented by Urja Pawar at IEEE CBMS 2021. The utility of the approach is demonstrated in the context of heart disease classification. Explainable Artificial Intelligence (XAI) is incorporated in the form of Feature Importance scores and correlated with an ML model’s performance metrics (Accuracy, F1-score). This provides a multi-stakeholder perspective aligned with the hierarchy as experienced in a real-world medical setting. The work contributes a methodology for accommodating an enhanced understanding of diverse hierarchical healthcare settings that would benefit from the adoption of AI-based systems.

Machine Learning Classification Emotive Speech Expression

Published:

Our work on emotive expression classification through speech analysis was presented at ISSC2021 by Zachary Dair. The approach combined affective prosody (Mel-frequency Cepstral Coefficient, Zero Crossing Rate, Chroma Energy Normalised) and semantic analysis (Bag-of-words model). A Convolutional neural network and Logistic regression model were combined to form an ensemble-based approach for the classification of emotive expressions from multi-modal data (audio, text). The approach builds upon existing work in emotion classification, sentiment analysis, and natural language processing techniques. Results demonstrate mixed accuracy across varied data sources, indicating the limitations and considerations of a generalised approach. There are direct benefits for Affective computing research as it enables (a) insight into the strengths and limitations of such models in correctly classifying emotion in relation to population differences (e.g. gender) and provides (b) a baseline for emotion classification in speech across the six canonical basic emotions (Anger, Fear, Disgust, Joy, Sadness, Surprise).

Methods for Creating Reproducible Machine Learning Pipelines for Skin Lesion Classification

Published:

Our work on a standardized approach for creating reproducible and sharable machine learning-based workflows for skin lesion classification as presented by David Walshe at the 2021 IEEE EMBS International Conference on Biomedical and Health Informatics. It combines a centralized data sourcing tool for the automated acquisition of highly cited skin lesion datasets from various online repositories. It provides a machine learning configuration-capture method that obtains a complete and faithful descriptor of a machine learning workflow. This descriptor is serialized into a sharable file format, enabling subsequent research to reimplement a cited model to a high degree of accuracy. The intent is to reduce the work associated with reimplementing state-of-the-art findings that arise from inconsistencies and ambiguities in recorded methodologies, increasing the velocity at which future research advancements can be achieved enabling a faithful reimplementation of baseline models.

Sleep Apnea Classification in an Activity Tracker Environment

Published:

Initial results on Sleep Apnea classification in a simulated Activity Tracker Environment as presented at 2021 IEEE EMBS International Conference on Biomedical and Health Informatics. The current generation of Activity trackers is becoming more advanced to derive blood oxygen saturation (SpO2), with SpO2 being an important indicator for sleep apnea. This work compares the performance of machine learning models in a simulated activity tracker environment. The results demonstrate that a Support Vector Machine (SVM) classifier trained with features extracted from a Convolutional Neural Network (CNN) can classify sleep apnea with a high degree of accuracy, warranting further investigation.

teaching